Raw BRCA1/2 variants in breast cancer patients and healthy relatives produced with GATK. Version 1
External LinkAligned sequencing data is available in the NCBI Sequence Read Archive (SRA, https://www.ncbi.nlm.nih.gov/sra/) under accession SRP095082. Variants were called using GATK HaplotypeCaller (version 3.6). After joint performing joint genotyping multi-sample vcf file was generated. Next, SNPs and indels were extracted into two different vcf files and specific set of filters were applied for each case.
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Created: 26th May 2026 at 16:52
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Version 1 (earliest) Created 26th May 2026 at 16:52 by Lana Karapetyan
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Abstract (Expand)
Authors: Sofi Atshemyan, Andranik Chavushyan, Nerses Berberian, Arthur Sahakyan, Roksana Zakharyan, Arsen Arakelyan
Date Published: 10th Jan 2017
Publication Type: Journal
