Data files

nuc_ctDNA_process ImageJ 1.x macros and Matlab code for processing 3D nuclear classification and quantification. This repo is designed to help you recreate the methods use in the associated publication. Please don't hesitate to contact if you have questions. Happy to debug, update, etc if there's need.

Lif files: Use ImageJ 1.x macro in fiji folder to process lif files for subsequent ilastik and Matlab processing. Works with 3 channel data (DAPI, DIC, Rh-Red-X) and 4 channel data (DAPI, Cy5, ...